We continuously review and integrate the old iMAP[1] with Snakemake and GitHub actions to facilitate reproducible microbiome data analysis!
We envision to keep fostering on continuous integration and development of highly reproducible workflows.
IMAP-PART3: Snakemake
workflow
The snakemake html report can be viewed using any compartible browser, such as chrome to explore more on the workflow and the associated statistics. You will be able to close the left bar to get a better view of the dispaly.
First initiate
mothurthen run the following commands on mothur cli to generate downstream input data.